My Ongoing Research topics
I enjoy Algorithms, Analysis and Automation and my passion is working in varied areas
of computational biology.
In the past, during my MS, I was involved in Sequence and Genome Analysis, that was
just 1 year of entry into biology. Earlier I was engineer. During my PhD,
I thoroughly enjoyed XRay crystallography, Structural Biology and Structural Bioinformatics.
Later as an entrepreneur,CTO, I enjoyed the Software Development cycle, polishing my expertise
in Programming and transcending to a project designer.
Now I am a PDF @UCSD in Prof. Shankar Subramaniam's Lab, working in Systems Biology & Pathway modeling. In the past 2 years, added Web Designing skills - PHP, Javascript, MySQL - together AJAX.
I try to occupy myself with algorithms , analysis ,automation projects or web design and development
projects. For all work, I tend to use my own creations: BioBhasha/BOS, since I created them with
that purpose i.e.Biological Programming - to be a one stop solution for all biological
queries. Here are a few ongoing topics which I am currently involved:
- Web based Microarray, Proteomic and Metabolomic data deposition, management and analysis system.
- Protein Protein interaction mapping algorithms
- Signalling pathway molecule page wiki development
- Microarray data analysis on effect of doping agent in different tissues
- microRNA data analysis
- Conformational speciation of protein structures using redundant PDB entries
- VAMPIRE: Attempting to improve the algorithm
- HOMER: Attempting to improve the algorithm
- Analysis on Intrinsically Unstructured Proteins(IUPs) / Intrinsically Disordered Proteins (IDPs)